C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: succinate-CoA ligase, GDP-forming, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000307227 SUCLG2-001 ENSG00000172340 9606 - 3:67374719-67654614 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307227
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307227 15.223±0.00 10.214±0.00 10.039±0.00 4.135±1.35 12.877±1.69 29.765±13.56 14.552±9.66 27.026±4.38 19.107±7.24 10.727±2.30 17.404±9.97 11.496±4.62 10.736±1.10 7.069±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001TI CIL_0001TI_0002 CGP 3:66998307-67654614
CIL_0001TH CIL_0001TH_0002 CGP 3:67360460-68545625

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004776 NAS succinate-CoA ligase (GDP-forming) activity
GO:0005524 IEA ATP binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0005886 IDA plasma membrane
GO:0006099 IEA tricarboxylic acid cycle
GO:0006104 NAS succinyl-CoA metabolic process
GO:0008152 IEA metabolic process
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000079847 Suclg2-201 protein_coding Mus_musculus 0 1554
ENSMUST00000120749 Gm15163-001 processed_pseudogene Mus_musculus 0 1493

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