C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000313654 LAMA3-001 ENSG00000053747 9606 + 18:23689443-23955066 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungOvaryENST00000313654
Transcript ID Brain Breast Kidney Liver Lung Ovary
ENST00000313654 0.281±0.00 0.768±0.06 0.028±0.00 1.423±0.00 6.359±5.14 0.887±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AV CIL_0005AV_0001 CGP 18:23598926-23955066
CIL_0005WU CIL_0005WU_0001 CGP 18:23689443-24135610

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005102 IEA receptor binding
GO:0005198 NAS structural molecule activity
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005604 TAS basement membrane
GO:0005606 IEA laminin-1 complex
GO:0005610 IEA laminin-5 complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007155 IEA cell adhesion
GO:0007165 IEA signal transduction
GO:0008544 TAS epidermis development
GO:0022617 TAS extracellular matrix disassembly
GO:0030155 IEA regulation of cell adhesion
GO:0030198 TAS extracellular matrix organization
GO:0030334 IEA regulation of cell migration
GO:0031581 TAS hemidesmosome assembly
GO:0034329 TAS cell junction assembly
GO:0035987 IEP endodermal cell differentiation
GO:0045995 IEA regulation of embryonic development
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092070 Lama3-001 protein_coding Mus_musculus 0 7993
ENSMUST00000188815 Lama3-002 protein_coding Mus_musculus 0 4030

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