C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syntaxin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000313843 STX4-001 ENSG00000103496 9606 + 16:31033491-31040168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313843
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313843 36.832±0.00 35.534±0.00 1.244±0.00 17.412±0.00 12.012±11.14 20.875±19.41 7.433±6.76 26.588±0.00 7.509±5.09 21.505±19.23 17.988±0.00 19.478±13.69 29.363±5.75 15.236±10.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XW CIL_0001XW_0001 CGP 16:30989256-31042975
CIL_0001UH CIL_0001UH_0001 CGP 16:31032889-31074320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 IEA SNARE binding
GO:0005484 IEA SNAP receptor activity
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005773 TAS vacuole
GO:0005802 IEA trans-Golgi network
GO:0005829 TAS cytosol
GO:0005886 IDA plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0006886 IEA intracellular protein transport
GO:0006892 TAS post-Golgi vesicle-mediated transport
GO:0007596 TAS blood coagulation
GO:0009986 IDA cell surface
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport
GO:0016323 IDA basolateral plasma membrane
GO:0030168 TAS platelet activation
GO:0031201 IDA SNARE complex
GO:0035493 IEA SNARE complex assembly
GO:0035749 IEA myelin sheath adaxonal region
GO:0042581 IDA specific granule
GO:0043219 IEA lateral loop
GO:0048471 IEA perinuclear region of cytoplasm
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033075 Stx4a-001 protein_coding Mus_musculus 0 1197
ENSMUST00000121705 Stx4a-002 protein_coding Mus_musculus 0 1055
ENSMUST00000156537 Stx4a-004 nonsense_mediated_decay Mus_musculus 0 749
ENSMUST00000142849 Stx4a-008 retained_intron Mus_musculus 0 616
ENSMUST00000138399 Stx4a-005 retained_intron Mus_musculus 0 436
ENSMUST00000123180 Stx4a-007 retained_intron Mus_musculus 0 403
ENSMUST00000152310 Stx4a-003 processed_transcript Mus_musculus 0 339
ENSMUST00000138294 Stx4a-006 retained_intron Mus_musculus 0 337

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