C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000314289 RNF4-001 ENSG00000063978 9606 + 4:2468937-2515855 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000314289
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000314289 20.047±0.00 9.646±0.00 3.993±0.00 7.840±0.00 12.440±0.00 8.568±0.00 7.916±6.60 4.101±0.10 2.359±0.00 2.644±1.44 13.862±6.57 12.929±2.67 17.107±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OB CIL_0003OB_0002 CGP 4:2269582-2462963
CIL_00057G CIL_00057G_0001 CGP 4:2462220-2732565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISS DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 NAS transcription coactivator activity
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016605 IDA PML body
GO:0016874 IEA ligase activity
GO:0030521 NAS androgen receptor signaling pathway
GO:0031491 ISS nucleosome binding
GO:0032184 ISS SUMO polymer binding
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046685 IDA response to arsenic-containing substance
GO:0046872 IEA metal ion binding
GO:0050681 NAS androgen receptor binding
GO:0051865 ISS protein autoubiquitination
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0070979 ISS protein K11-linked ubiquitination
GO:0085020 ISS protein K6-linked ubiquitination
GO:0090169 IMP regulation of spindle assembly
GO:0090234 IMP regulation of kinetochore assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182047 Rnf4-006 protein_coding Mus_musculus 0 998
ENSMUST00000030992 Rnf4-001 protein_coding Mus_musculus 0 998
ENSMUST00000182709 Rnf4-002 protein_coding Mus_musculus 0 998
ENSMUST00000183265 Rnf4-003 retained_intron Mus_musculus 0 488
ENSMUST00000182970 Rnf4-004 retained_intron Mus_musculus 0 453
ENSMUST00000182583 Rnf4-005 protein_coding Mus_musculus 0 431
ENSMUST00000181991 Rnf4-011 processed_transcript Mus_musculus 0 401
ENSMUST00000119524 Gm16074-001 processed_pseudogene Mus_musculus 0 396
ENSMUST00000183071 Rnf4-012 retained_intron Mus_musculus 0 296

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