C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: anaphase promoting complex subunit 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315368 ANAPC4-001 ENSG00000053900 9606 + 4:25377213-25418498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000315368
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000315368 1.969±0.00 2.556±0.00 1.918±0.66 5.526±0.00 1.064±0.00 0.930±0.00 2.031±0.30 1.769±0.00 8.157±0.00 3.060±0.47 4.659±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002F9 CIL_0002F9_0001 CGP 4:25312785-25418498
CIL_0002FA CIL_0002FA_0001 CGP 4:25377213-25678748

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005680 IEA:IDA anaphase-promoting complex
GO:0005829 TAS cytosol
GO:0007067 IEA mitotic nuclear division
GO:0007094 TAS mitotic spindle assembly checkpoint
GO:0019903 IPI protein phosphatase binding
GO:0030071 IEA regulation of mitotic metaphase/anaphase transition
GO:0031145 IEA:TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031072 Anapc4-001 protein_coding Mus_musculus 0 2913
ENSMUST00000144574 Anapc4-002 nonsense_mediated_decay Mus_musculus 0 2588
ENSMUST00000154980 Anapc4-010 retained_intron Mus_musculus 0 817
ENSMUST00000145349 Anapc4-007 retained_intron Mus_musculus 0 627
ENSMUST00000142035 Anapc4-006 retained_intron Mus_musculus 0 577
ENSMUST00000130536 Anapc4-003 retained_intron Mus_musculus 0 562
ENSMUST00000150682 Anapc4-004 processed_transcript Mus_musculus 0 422
ENSMUST00000131750 Anapc4-008 retained_intron Mus_musculus 0 416

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