C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 4 (anion exchanger), member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317151 SLC4A3-002 ENSG00000114923 9606 + 2:219627661-219641980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaENST00000317151
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta
ENST00000317151 0.454±0.00 1.233±0.00 0.102±0.00 2.713±1.43 0.951±0.00 0.998±0.00 11.464±9.44 0.127±0.00 0.365±0.00 0.031±0.00 14.185±9.53 0.938±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000916 CIL_000916_0001 VISTA 2:219106772-219707284
CIL_00082R CIL_00082R_0001 VISTA 2:219549147-220152579
CIL_0006O3 CIL_0006O3_0001 CGP 2:219597860-219641980
CIL_0008ED CIL_0008ED_0001 VISTA 2:219606364-220208558
CIL_0006O4 CIL_0006O4_0001 CGP 2:219627327-221574202

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005452 IEA inorganic anion exchanger activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 TAS ion transport
GO:0006820 IEA anion transport
GO:0008509 IEA anion transmembrane transporter activity
GO:0015701 TAS bicarbonate transport
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000124341 Slc4a3-001 protein_coding Mus_musculus 0 4392
ENSMUST00000027415 Slc4a3-010 nonsense_mediated_decay Mus_musculus 0 4242
ENSMUST00000132612 Slc4a3-002 retained_intron Mus_musculus 0 2928
ENSMUST00000145258 Slc4a3-012 nonsense_mediated_decay Mus_musculus 0 2025
ENSMUST00000154101 Slc4a3-007 protein_coding Mus_musculus 0 540
ENSMUST00000150142 Slc4a3-004 protein_coding Mus_musculus 0 483
ENSMUST00000138814 Slc4a3-005 protein_coding Mus_musculus 0 453
ENSMUST00000142257 Slc4a3-008 retained_intron Mus_musculus 0 407
ENSMUST00000189794 Slc4a3-013 retained_intron Mus_musculus 0 340
ENSMUST00000145516 Slc4a3-003 retained_intron Mus_musculus 0 340
ENSMUST00000129703 Slc4a3-006 retained_intron Mus_musculus 0 340
ENSMUST00000132110 Slc4a3-011 nonsense_mediated_decay Mus_musculus 0 265

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