C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317201 HOXA3-002 ENSG00000105997 9606 - 7:27107012-27140219 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000317201
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000317201 3.100±0.00 4.066±0.00 4.592±0.00 2.434±0.00 0.207±0.00 0.052±0.00 3.508±0.00 0.827±0.39 2.018±1.69 0.245±0.00 3.441±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEP angiogenesis
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114434 Hoxa3-001 protein_coding Mus_musculus 0 2614
ENSMUST00000134831 Hoxa3-004 protein_coding Mus_musculus 0 383
ENSMUST00000055334 Hoxb3-001 protein_coding Mus_musculus 0 287
ENSMUST00000093944 Hoxb3-002 protein_coding Mus_musculus 0 287
ENSMUST00000142764 Hoxa3-003 retained_intron Mus_musculus 1e-35 156
ENSMUST00000128102 RP23-103L13.12-001 protein_coding Mus_musculus 1e-35 156
ENSMUST00000062829 Hoxa6-001 protein_coding Mus_musculus 8e-28 130
ENSMUST00000048715 Hoxa7-201 protein_coding Mus_musculus 6e-24 117
ENSMUST00000134367 Hoxa7-004 protein_coding Mus_musculus 6e-24 117
ENSMUST00000153280 Hoxa7-002 nonsense_mediated_decay Mus_musculus 6e-24 117
ENSMUST00000049241 Hoxb4-001 protein_coding Mus_musculus 2e-23 115
ENSMUST00000120363 Hoxa1-002 protein_coding Mus_musculus 8e-18 97
ENSMUST00000000964 Hoxa1-001 protein_coding Mus_musculus 8e-18 97
ENSMUST00000053932 HOXD3-001 nonsense_mediated_decay Mus_musculus 0.00000008 64
ENSMUST00000047904 Hoxd4-201 protein_coding Mus_musculus 0.00000008 64
ENSMUST00000111980 Hoxd4-001 protein_coding Mus_musculus 0.00000008 64
ENSMUST00000144040 Hoxd4-002 processed_transcript Mus_musculus 0.00000008 64
ENSDART00000146993 hoxa3a-001 protein_coding Danio_rerio 0.00001 57
ENSDART00000052633 hoxa3a-002 protein_coding Danio_rerio 0.00001 57

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