C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AF4/FMR2 family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317233 AFF3-201 ENSG00000144218 9606 - 2:99547256-100142575 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000317233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000317233 0.606±0.00 2.633±0.00 0.420±0.00 3.717±0.39 1.454±0.65 1.438±0.87 0.396±0.30 0.539±0.05 1.752±1.58 1.610±0.32 0.186±0.03 0.810±0.96 1.217±0.01 2.511±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000346 CIL_000346_0001 CGP 2:99400475-100142739
CIL_0007N7 CIL_0007N7_0002 UCNEbase 2:99405215-99899588
CIL_0004HL CIL_0004HL_0001 CGP 2:99545419-100322733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003690 IDA double-stranded DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0034612 IMP response to tumor necrosis factor
GO:0035116 IMP embryonic hindlimb morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095027 Aff3-002 protein_coding Mus_musculus 0 2333
ENSMUST00000039827 Aff3-201 protein_coding Mus_musculus 0 2320
ENSMUST00000027250 Aff3-001 protein_coding Mus_musculus 0 1227
ENSMUST00000136641 Aff3-005 protein_coding Mus_musculus 0 822
ENSMUST00000134963 Aff3-004 nonsense_mediated_decay Mus_musculus 0 641
ENSMUST00000105321 Nfic-001 protein_coding Mus_musculus 0.000003 60
ENSMUST00000091246 Flcn-005 protein_coding Mus_musculus 0.00004 57
ENSMUST00000148151 Flcn-003 retained_intron Mus_musculus 0.00004 57
ENSMUST00000102697 Flcn-004 protein_coding Mus_musculus 0.00004 57

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