C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming, acidic coiled-coil containing protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317827 TACC1-001 ENSG00000147526 9606 + 8:38787204-38853028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000317827
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000317827 12.634±0.00 7.888±0.00 7.731±0.94 10.648±2.42 3.627±0.00 6.653±0.00 3.228±0.00 2.049±0.00 11.994±5.03 6.757±0.74 3.836±0.00 5.437±2.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NR CIL_0008NR_0001 VISTA 8:38140056-38746180
CIL_0008SM CIL_0008SM_0001 VISTA 8:38252496-38854674
CIL_0008H7 CIL_0008H7_0001 VISTA 8:38253282-38854976
CIL_0008D9 CIL_0008D9_0001 VISTA 8:38350004-38951124

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IDA cytoplasm
GO:0007049 IEA cell cycle
GO:0008283 IEA cell proliferation
GO:0015630 IDA microtubule cytoskeleton
GO:0019904 IEA protein domain specific binding
GO:0021987 IEA cerebral cortex development
GO:0022008 IEA neurogenesis
GO:0022027 IEA interkinetic nuclear migration
GO:0032886 IEA regulation of microtubule-based process
GO:0045111 IDA intermediate filament cytoskeleton
GO:0051301 IEA cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084030 Tacc1-201 protein_coding Mus_musculus 0 977
ENSMUST00000084512 Tacc1-202 protein_coding Mus_musculus 0 977
ENSMUST00000118379 Gm4994-001 processed_pseudogene Mus_musculus 0 628

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