C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: autophagy related 4C, cysteine peptidase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000317868 ATG4C-001 ENSG00000125703 9606 + 1:62784135-62865513 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverOvaryPlacentaENST00000317868
Transcript ID Adrenal Brain Breast Colon Liver Ovary Placenta
ENST00000317868 0.571±0.00 1.354±0.35 0.339±0.00 1.254±0.00 0.751±0.05 0.324±0.08 0.571±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002G5 CIL_0002G5_0001 CGP 1:62597487-62865513
CIL_0008H9 CIL_0008H9_0001 VISTA 1:62603678-63205223
CIL_00085L CIL_00085L_0001 VISTA 1:62677863-63279213
CIL_00089A CIL_00089A_0001 VISTA 1:62698611-63300046

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000045 IGI autophagic vacuole assembly
GO:0004197 IMP cysteine-type endopeptidase activity
GO:0005576 IDA extracellular region
GO:0005737 IEA:ISS cytoplasm
GO:0005829 ISS cytosol
GO:0006508 IEA:IDA proteolysis
GO:0006612 ISS protein targeting to membrane
GO:0006914 IEA:IGI autophagy
GO:0008233 IDA peptidase activity
GO:0008234 IEA cysteine-type peptidase activity
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180278 Atg4c-201 protein_coding Mus_musculus 0 1688
ENSMUST00000030279 Atg4c-001 protein_coding Mus_musculus 0 1688

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