C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: rhomboid domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000318622 RHBDD2-201 ENSG00000005486 9606 + 7:75878999-75888926 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverLungOvaryTestisENST00000318622
Transcript ID Adrenal Breast Liver Lung Ovary Testis
ENST00000318622 6.084±0.00 1.215±0.00 0.867±0.00 1.401±0.00 28.098±0.00 11.106±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NQ CIL_0006NQ_0001 CGP 7:75811665-75888926
CIL_0006NP CIL_0006NP_0001 CGP 7:75842602-75986855

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004252 IEA serine-type endopeptidase activity
GO:0005634 IDA nucleus
GO:0005794 IDA Golgi apparatus
GO:0006508 IEA proteolysis
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000136748 Rhbdd2-002 nonsense_mediated_decay Mus_musculus 0 1253
ENSMUST00000043707 Rhbdd2-001 protein_coding Mus_musculus 0 931
ENSMUST00000084599 Rhbdd2-003 retained_intron Mus_musculus 0 479

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