C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sphingosine-1-phosphate phosphatase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000321276 SGPP2-001 ENSG00000163082 9606 + 2:222424517-222560948 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000321276
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000321276 0.110±0.00 0.348±0.00 1.774±0.00 5.712±0.00 0.670±0.08 0.610±0.00 3.032±2.36 7.633±7.59 0.303±0.25 3.319±1.92 0.163±0.00 4.065±3.85 0.110±0.03 1.214±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C0 CIL_0008C0_0001 VISTA 2:221914664-222515720
CIL_0008LF CIL_0008LF_0001 VISTA 2:221986023-222587201
CIL_00041I CIL_00041I_0002 CGP 2:222424517-222656337

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006665 TAS sphingolipid metabolic process
GO:0006670 IDA sphingosine metabolic process
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016311 IDA dephosphorylation
GO:0030148 TAS sphingolipid biosynthetic process
GO:0042392 IDA sphingosine-1-phosphate phosphatase activity
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036172 Sgpp2-001 protein_coding Mus_musculus 0 1105

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