C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L10a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000322203 RPL10A-001 ENSG00000198755 9606 + 6:35468408-35470785 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000322203
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000322203 259.598±0.00 352.543±0.00 28.338±0.00 80.752±23.04 148.468±34.12 292.582±166.78 64.426±37.40 189.601±104.09 144.916±3.63 236.184±164.42 180.425±100.05 769.397±681.75 734.610±204.95 140.573±43.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008UQ CIL_0008UQ_0001 VISTA 6:35189352-35792826
CIL_0002L9 CIL_0002L9_0002 CGP 6:35452361-35470785
CIL_0002EP CIL_0002EP_0001 CGP 6:35468408-35497076

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 IEA RNA binding
GO:0003735 NAS:IEA structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0006412 NAS:IEA translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0009653 TAS anatomical structure morphogenesis
GO:0010467 TAS gene expression
GO:0015934 IEA large ribosomal subunit
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042334 Rpl10a-001 protein_coding Mus_musculus 0 824
ENSMUST00000120360 Rpl10a-ps1-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000116410 Gm13573-001 processed_pseudogene Mus_musculus 0 680
ENSMUST00000071184 Rpl10a-ps2-001 processed_pseudogene Mus_musculus 0 634
ENSMUST00000129935 Rpl10a-002 nonsense_mediated_decay Mus_musculus 0 568
ENSMUST00000141049 Rpl10a-007 retained_intron Mus_musculus 0 398
ENSMUST00000150103 Rpl10a-005 retained_intron Mus_musculus 0 390
ENSMUST00000152665 Rpl10a-003 retained_intron Mus_musculus 0 265
ENSMUST00000128758 Rpl10a-006 retained_intron Mus_musculus 0 261
ENSMUST00000143443 Rpl10a-004 retained_intron Mus_musculus 0 244

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