C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: class II, major histocompatibility complex, transactivator
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324288 CIITA-001 ENSG00000179583 9606 + 16:10877198-10932281 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartMuscleOvaryENST00000324288
Transcript ID Adrenal Brain Colon Heart Muscle Ovary
ENST00000324288 6.318±0.00 0.463±0.00 0.496±0.19 0.505±0.00 0.234±0.00 0.948±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000750 CIL_000750_0001 CGP 16:10760919-10932281
CIL_000751 CIL_000751_0001 CGP 16:10877198-10942460

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000023147 Ciita-201 protein_coding Mus_musculus 0 1781
ENSMUST00000078259 Nsl1-001 protein_coding Mus_musculus 0.00000000000002 88
ENSMUST00000156289 Rgs20-006 retained_intron Mus_musculus 0.000005 60

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