C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen-like domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000324938 LIMS2-005 ENSG00000072163 9606 - 2:127638426-127664546 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryPlacentaTestisENST00000324938
Transcript ID Liver Muscle Ovary Placenta Testis
ENST00000324938 3.321±0.00 0.627±0.00 3.196±0.00 13.558±0.00 2.266±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000197 CIL_000197_0001 CGP 2:127638381-127681786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0005925 IDA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0016337 IEA single organismal cell-cell adhesion
GO:0034329 TAS cell junction assembly
GO:0043066 IEA negative regulation of apoptotic process
GO:0045216 IEA cell-cell junction organization
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:2000178 IEA negative regulation of neural precursor cell proliferation
GO:2000346 IEA negative regulation of hepatocyte proliferation
GO:2001046 IEA positive regulation of integrin-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025254 Lims2-201 protein_coding Mus_musculus 0 1242
ENSDART00000033980 lims1-201 protein_coding Danio_rerio 0 749
ENSMUST00000105468 Lims1-003 protein_coding Mus_musculus 0 638
ENSMUST00000020078 Lims1-001 protein_coding Mus_musculus 0 638
ENSMUST00000020077 Lims1-002 protein_coding Mus_musculus 0 569
ENSMUST00000119116 Gm15665-001 processed_pseudogene Mus_musculus 0 224
ENSMUST00000064016 Gpr17-001 protein_coding Mus_musculus 1e-35 156
ENSMUST00000148799 Lims1-005 processed_transcript Mus_musculus 6e-23 113

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