C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000325307 HMGB3-001 ENSG00000029993 9606 + X:150983286-150990775 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000325307
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000325307 1.815±0.00 1.773±0.00 3.373±1.82 1.079±0.73 1.317±0.22 0.577±0.00 1.841±0.60 3.411±2.94 0.922±0.56 2.158±2.06 1.903±1.06 30.917±11.80 4.492±1.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000UN CIL_0000UN_0002 CGP X:150766337-150990775
CIL_0009DG CIL_0009DG_0001 VISTA X:150939220-151540580
CIL_0001AV CIL_0001AV_0001 CGP X:150980509-151181465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003690 ISS double-stranded DNA binding
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0006310 ISS DNA recombination
GO:0007275 TAS multicellular organismal development
GO:0008301 ISS DNA binding, bending
GO:0044822 IDA poly(A) RNA binding
GO:0045578 IEA negative regulation of B cell differentiation
GO:0045638 IEA negative regulation of myeloid cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 1903
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 1834
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 1744
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 1740
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 832
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 806
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 743
ENSMUST00000120072 Gm5060-001 processed_pseudogene Mus_musculus 0 673
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 658
ENSMUST00000155930 Gm8813-001 processed_pseudogene Mus_musculus 0 647
ENSMUST00000117931 Gm12365-001 processed_pseudogene Mus_musculus 0 630
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 599
ENSMUST00000117806 Gm15576-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000162465 Hmgb3-ps-001 processed_pseudogene Mus_musculus 0 577
ENSMUST00000117771 Gm5752-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000117677 Gm13386-001 processed_pseudogene Mus_musculus 2e-30 139

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