C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326199 RPS10-001 ENSG00000124614 9606 - 6:34417454-34426125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326199
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326199 146.547±0.00 236.600±0.00 108.548±49.08 156.535±43.16 47.349±0.00 113.394±32.08 109.633±24.54 226.799±178.73 176.589±0.00 525.481±318.04 426.685±50.57 100.229±8.82

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PV CIL_0001PV_0002 CGP 6:34279679-34426048
CIL_0004LP CIL_0004LP_0002 CGP 6:34417454-34535231

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 IPI protein binding
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005840 NAS ribosome
GO:0005925 IDA focal adhesion
GO:0006412 IC translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022627 IDA cytosolic small ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114882 Rps10-001 protein_coding Mus_musculus 0 760
ENSMUST00000114881 Rps10-003 protein_coding Mus_musculus 0 688
ENSMUST00000155071 Rps10-006 processed_transcript Mus_musculus 0 678
ENSMUST00000178774 Rps10-201 protein_coding Mus_musculus 0 673
ENSMUST00000127484 Rps10-ps2-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000074353 Rps10-ps1-201 protein_coding Mus_musculus 0 651
ENSMUST00000025052 Rps10-002 protein_coding Mus_musculus 0 571
ENSMUST00000145226 Rps10-004 retained_intron Mus_musculus 0 568
ENSMUST00000120308 Rps10-ps4-001 processed_pseudogene Mus_musculus 0 483
ENSMUST00000152982 Rps10-007 processed_transcript Mus_musculus 0 368

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