C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligand dependent nuclear receptor corepressor-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000326877 LCORL-001 ENSG00000178177 9606 - 4:17841199-18021876 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326877
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326877 1.248±0.00 0.325±0.00 0.413±0.11 0.336±0.00 0.611±0.00 0.245±0.02 0.937±0.00 0.448±0.00 0.776±0.00 0.548±0.00 0.527±0.24 0.231±0.00 1.557±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OQ CIL_0002OQ_0001 CGP 4:17810902-18021876
CIL_0002OP CIL_0002OP_0001 CGP 4:17841199-20620561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045586 Lcorl-001 protein_coding Mus_musculus 0 2008
ENSMUST00000121573 Lcorl-004 protein_coding Mus_musculus 0 1544
ENSMUST00000016026 Lcorl-002 protein_coding Mus_musculus 0 1251
ENSMUST00000190036 Lcorl-007 protein_coding Mus_musculus 0 1092
ENSMUST00000087164 Lcorl-005 protein_coding Mus_musculus 0 998
ENSMUST00000156295 Lcorl-006 retained_intron Mus_musculus 0 959
ENSMUST00000067997 Lcorl-003 protein_coding Mus_musculus 0 754
ENSMUST00000187615 Lcorl-009 nonsense_mediated_decay Mus_musculus 0 750
ENSMUST00000189859 Lcorl-010 protein_coding Mus_musculus 0 468
ENSMUST00000186633 Lcorl-008 nonsense_mediated_decay Mus_musculus 0 350

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