C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328086 ZKSCAN2-001 ENSG00000155592 9606 - 16:25236001-25257931 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000328086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000328086 0.622±0.00 1.054±0.00 0.343±0.00 0.985±0.11 0.668±0.27 0.356±0.00 0.850±0.00 0.404±0.25 0.606±0.22 0.448±0.05 0.760±0.45 0.863±0.42 0.855±0.32 3.664±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KP CIL_0005KP_0001 CGP 16:25215731-25257931
CIL_0003X1 CIL_0003X1_0001 CGP 16:25236001-26137688

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005622 IEA intracellular
GO:0005634 IBA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0008150 ND biological_process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042470 Zkscan2-001 protein_coding Mus_musculus 0 2643
ENSMUST00000125356 Zkscan2-003 protein_coding Mus_musculus 0 704
ENSMUST00000128217 Zkscan2-002 protein_coding Mus_musculus 0 584
ENSMUST00000079024 Zscan29-004 protein_coding Mus_musculus 2e-23 117
ENSMUST00000110661 Zscan29-001 protein_coding Mus_musculus 2e-23 117
ENSMUST00000163766 Zscan29-201 protein_coding Mus_musculus 1e-19 104
ENSMUST00000156370 Zscan29-003 retained_intron Mus_musculus 1e-19 104
ENSMUST00000040628 Zfp182-002 protein_coding Mus_musculus 0.00000000000005 86
ENSMUST00000115334 Zfp182-003 protein_coding Mus_musculus 0.00000000000005 86
ENSMUST00000115333 Zfp182-001 protein_coding Mus_musculus 0.00000000000005 86

Loading