C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GATS, stromal antigen 3 opposite strand
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000328453 GATS-011 ENSG00000239521 9606 - 7:100200653-100272206 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000328453
Transcript ID Adipose Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000328453 5.075±0.00 9.464±3.44 1.372±0.69 1.188±0.67 0.613±0.00 0.841±0.15 19.438±0.00 4.568±1.39 1.028±0.15 10.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005CH CIL_0005CH_0001 CGP 7:100169606-100221488

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000016088 Gatsl2-001 protein_coding Mus_musculus 0 758
ENSMUST00000140240 Gatsl2-002 retained_intron Mus_musculus 0 499
ENSMUST00000162245 Stag3-004 protein_coding Mus_musculus 0 196
ENSMUST00000048028 Stag3-001 protein_coding Mus_musculus 0 196
ENSMUST00000161113 Stag3-002 retained_intron Mus_musculus 0 196

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