C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331789 ACTB-001 ENSG00000075624 9606 - 7:5527151-5530709 protein_coding

Homo sapiens EnsemblGRCh38

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331789
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331789 1636.060±0.00 1512.510±0.00 13.539±0.00 376.087±112.04 599.363±330.71 1059.447±713.45 152.877±123.45 284.813±196.38 464.973±67.08 1222.303±1089.61 265.266±0.00 1345.335±833.45 2236.070±366.46 445.220±116.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_0002V9 CIL_0002V9_0001 CGP 7:5431335-5563784
CIL_0002V8 CIL_0002V8_0001 CGP 7:5527151-5606655

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001895 IEP retina homeostasis
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005615 IDA extracellular space
GO:0005654 TAS nucleoplasm
GO:0005737 TAS cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005925 IDA focal adhesion
GO:0006325 TAS chromatin organization
GO:0006457 TAS protein folding
GO:0006928 TAS cellular component movement
GO:0007409 IEA axonogenesis
GO:0007411 TAS axon guidance
GO:0007596 TAS blood coagulation
GO:0014069 IEA postsynaptic density
GO:0016020 IDA membrane
GO:0019894 IPI kinesin binding
GO:0019901 IEA protein kinase binding
GO:0021762 IEP substantia nigra development
GO:0030424 IEA axon
GO:0030529 IDA ribonucleoprotein complex
GO:0030863 IEA cortical cytoskeleton
GO:0030957 IPI Tat protein binding
GO:0031492 IDA nucleosomal DNA binding
GO:0034329 TAS cell junction assembly
GO:0034332 TAS adherens junction organization
GO:0035267 IDA NuA4 histone acetyltransferase complex
GO:0036464 IDA cytoplasmic ribonucleoprotein granule
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0045087 TAS innate immune response
GO:0045216 TAS cell-cell junction organization
GO:0050998 IPI nitric-oxide synthase binding
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:0070527 IMP platelet aggregation
GO:0070688 IDA MLL5-L complex
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1712
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 1637
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1415
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1415
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1413
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 1352
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 1352
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 1338
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 1277
ENSMUST00000140208 Gm8464-002 processed_transcript Mus_musculus 0 1267
ENSMUST00000152262 Gm4750-002 processed_transcript Mus_musculus 0 1262
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 1240
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 1149
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 1149
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 1112
ENSDART00000062370 actc1a-001 protein_coding Danio_rerio 0 1096
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 1094
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 1075
ENSDART00000114549 hm:zewp0073-201 protein_coding Danio_rerio 0 1074
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 1072
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 1070
ENSMUST00000146697 Gm8464-001 transcribed_processed_pseudogene Mus_musculus 0 1059
ENSMUST00000151942 Gm4750-001 transcribed_processed_pseudogene Mus_musculus 0 1059
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 1038
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 1014
ENSDART00000080664 protein_coding Danio_rerio 0 996
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 972
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 970
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 944
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 935
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 915
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 881
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 815
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 780
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 754
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 658
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 636
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 545
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 545
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 486
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 466
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 455
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 453
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 449
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 425
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 346
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 339
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 311
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 0 281
ENSDART00000155770 ACTC1 (2 of 2)-001 protein_coding Danio_rerio 0 215

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