C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000332272 CHST6-003 ENSG00000183196 9606 - 16:75472052-75495028 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000332272
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000332272 0.103±0.00 0.246±0.00 0.015±0.00 1.382±0.22 0.064±0.03 0.085±0.07 0.154±0.00 0.016±0.00 0.560±0.05 0.014±0.01 0.166±0.15 0.081±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002T5 CIL_0002T5_0001 CGP 16:75443054-75495384
CIL_0001FX CIL_0001FX_0002 CGP 16:75472052-75545428

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS:IEA Golgi membrane
GO:0001517 TAS N-acetylglucosamine 6-O-sulfotransferase activity
GO:0005794 TAS Golgi apparatus
GO:0005975 TAS:IEA carbohydrate metabolic process
GO:0006044 IC N-acetylglucosamine metabolic process
GO:0006790 IDA sulfur compound metabolic process
GO:0008146 IEA sulfotransferase activity
GO:0016021 IEA integral component of membrane
GO:0018146 IDA keratan sulfate biosynthetic process
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0042339 TAS keratan sulfate metabolic process
GO:0044281 TAS small molecule metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000034430 Chst5-201 protein_coding Mus_musculus 0 1002
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00000007 66
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.0000009 62
ENSMUST00000123555 Parp3-004 protein_coding Mus_musculus 0.000003 60
ENSMUST00000067218 Parp3-001 protein_coding Mus_musculus 0.000003 60
ENSMUST00000117445 Spata22-002 protein_coding Mus_musculus 0.00000000001 77

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