C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Williams-Beuren syndrome chromosome region 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333538 WBSCR17-001 ENSG00000185274 9606 + 7:71132169-71713599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333538 2.016±0.00 0.357±0.00 0.333±0.00 10.724±6.63 0.777±0.37 3.899±3.72 11.430±10.71 1.677±0.00 2.410±0.00 2.501±1.81 0.810±0.00 4.659±3.53 0.676±0.51 3.939±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072U CIL_00072U_0002 CGP 7:71132169-72447151

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004653 IEA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0016021 IEA integral component of membrane
GO:0030246 IEA carbohydrate binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086023 Wbscr17-001 protein_coding Mus_musculus 0 2314
ENSMUST00000160609 Wbscr17-002 protein_coding Mus_musculus 0 1430
ENSMUST00000160807 Wbscr17-003 retained_intron Mus_musculus 0 987
ENSMUST00000161228 Wbscr17-004 retained_intron Mus_musculus 0 584

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