C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, beta 2A class IIa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333628 TUBB2A-001 ENSG00000137267 9606 - 6:3153669-3157526 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000333628
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000333628 6.063±0.00 3.618±0.00 0.793±0.00 71.496±22.80 17.249±15.51 4.159±3.68 1.821±1.41 9.690±5.83 5.495±4.41 2.834±2.54 1.824±0.85 5.639±3.46 26.138±8.76 2.968±2.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081I CIL_00081I_0001 VISTA 6:2946622-3549686
CIL_000823 CIL_000823_0001 VISTA 6:3049163-3652023
CIL_0003IT CIL_0003IT_0001 CGP 6:3118374-3157526
CIL_0003IU CIL_0003IU_0001 CGP 6:3153669-3231730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005874 IDA microtubule
GO:0006184 IEA GTP catabolic process
GO:0006457 TAS protein folding
GO:0007017 IEA microtubule-based process
GO:0031982 IDA vesicle
GO:0043234 IEA protein complex
GO:0044267 TAS cellular protein metabolic process
GO:0051084 TAS 'de novo' posttranslational protein folding
GO:0051258 IEA protein polymerization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000056427 Tubb2a-201 protein_coding Mus_musculus 0 2045
ENSMUST00000075774 Tubb2b-201 protein_coding Mus_musculus 0 1842
ENSMUST00000043584 Tubb4b-001 protein_coding Mus_musculus 0 1384
ENSMUST00000071134 Tubb3-001 protein_coding Mus_musculus 0 1360
ENSMUST00000001513 Tubb6-201 protein_coding Mus_musculus 0 1358
ENSDART00000041279 tubb4b-001 protein_coding Danio_rerio 0 1356
ENSMUST00000071135 Tubb4a-201 protein_coding Mus_musculus 0 1345
ENSMUST00000001566 Tubb5-001 protein_coding Mus_musculus 0 1330
ENSDART00000055380 tubb5-201 protein_coding Danio_rerio 0 1327
ENSDART00000143702 zgc:123194-001 protein_coding Danio_rerio 0 1304
ENSMUST00000179460 Tubb4b-ps1-201 protein_coding Mus_musculus 0 1297
ENSDART00000019573 zgc:65894-001 protein_coding Danio_rerio 0 1288
ENSDART00000066859 tubb4b-001 protein_coding Danio_rerio 0 1258
ENSDART00000131187 tubb4b-201 protein_coding Danio_rerio 0 1253
ENSDART00000024135 protein_coding Danio_rerio 0 1225
ENSMUST00000187481 RP23-8J15.8-001 processed_pseudogene Mus_musculus 0 1195
ENSDART00000061149 zgc:55461-001 protein_coding Danio_rerio 0 1175
ENSDART00000129104 protein_coding Danio_rerio 0 1155
ENSDART00000127071 FP102463.1-201 protein_coding Danio_rerio 0 1035
ENSDART00000147110 tubb4b-002 processed_transcript Danio_rerio 0 702
ENSDART00000134744 tubb4b-003 processed_transcript Danio_rerio 0 649
ENSMUST00000160140 Gm16165-001 processed_pseudogene Mus_musculus 0 643
ENSMUST00000173253 Tubb5-004 retained_intron Mus_musculus 0 604
ENSMUST00000134978 Tubb5-003 protein_coding Mus_musculus 0 230

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