C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7 pseudogene 26
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000333817 RPL7P26-001 ENSG00000184612 9606 - 6:17530899-17531652 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000333817
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000333817 0.065±0.00 0.139±0.00 0.190±0.00 0.170±0.00 0.100±0.00 0.087±0.07 0.104±0.00 0.786±0.00 0.485±0.09 0.231±0.11 0.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009C9 CIL_0009C9_0001 VISTA 6:17172901-17774881
CIL_0008JF CIL_0008JF_0001 VISTA 6:17172919-17774874
CIL_0008B7 CIL_0008B7_0001 VISTA 6:17234961-17839440
CIL_0003RO CIL_0003RO_0001 CGP 6:17281346-17557792
CIL_0003RP CIL_0003RP_0001 CGP 6:17393216-17611719
CIL_00081D CIL_00081D_0001 VISTA 6:17414467-18016353

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000058437 Rpl7-001 protein_coding Mus_musculus 0 749
ENSMUST00000119853 Gm12174-001 processed_pseudogene Mus_musculus 0 732
ENSMUST00000027054 Gm5045-201 processed_pseudogene Mus_musculus 0 710
ENSMUST00000149566 Rpl7-003 protein_coding Mus_musculus 0 684
ENSMUST00000118173 Gm6274-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000122189 Gm5392-001 processed_pseudogene Mus_musculus 0 580
ENSMUST00000118692 Gm12090-001 processed_pseudogene Mus_musculus 0 573
ENSMUST00000117062 Gm15159-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000148424 1700073E17Rik-001 transcribed_processed_pseudogene Mus_musculus 0 521
ENSMUST00000152419 1700073E17Rik-002 processed_transcript Mus_musculus 0 521
ENSMUST00000141217 Rpl7-002 retained_intron Mus_musculus 0 470
ENSDART00000019149 rpl7-001 protein_coding Danio_rerio 0 303
ENSMUST00000151017 Rpl7-005 retained_intron Mus_musculus 0 257
ENSMUST00000140597 Rpl7-006 processed_transcript Mus_musculus 0 257

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