C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope family member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334258 SYNE3-005 ENSG00000176438 9606 - 14:95417494-95475836 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000334258
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000334258 5.368±0.00 0.447±0.00 2.286±0.00 0.387±0.00 0.941±0.00 3.000±0.00 1.835±0.07 0.667±0.00 1.033±0.00 0.850±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00085I CIL_00085I_0001 VISTA 14:95070077-95673144
CIL_00099M CIL_00099M_0001 VISTA 14:95131820-95732594
CIL_0008Z4 CIL_0008Z4_0001 VISTA 14:95131888-95732401
CIL_0007F2 CIL_0007F2_0001 CGP 14:95407266-95544724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005635 IDA nuclear envelope
GO:0005640 IEA nuclear outer membrane
GO:0005783 IEA endoplasmic reticulum
GO:0007010 IMP cytoskeleton organization
GO:0008360 IMP regulation of cell shape
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0034993 IDA SUN-KASH complex
GO:0051015 IMP actin filament binding
GO:0090150 IDA establishment of protein localization to membrane
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095439 Syne3-202 protein_coding Mus_musculus 0 2385
ENSMUST00000109927 Syne3-203 protein_coding Mus_musculus 0 2076
ENSMUST00000067005 Syne3-201 protein_coding Mus_musculus 0 2076
ENSDART00000154181 syne3-001 protein_coding Danio_rerio 0.000000000004 79

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