C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nudE neurodevelopment protein 1-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334527 NDEL1-001 ENSG00000166579 9606 + 17:8435861-8468160 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartLiverOvaryPlacentaTestisENST00000334527
Transcript ID Adrenal Breast Colon Heart Liver Ovary Placenta Testis
ENST00000334527 7.555±0.00 6.232±0.00 6.384±0.00 6.968±0.00 3.075±0.00 18.615±2.30 17.993±1.58 17.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AZ CIL_0009AZ_0001 VISTA 17:8380027-8982000
CIL_00088C CIL_00088C_0001 VISTA 17:8397056-8997791

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IEA microtubule cytoskeleton organization
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0001764 IEA neuron migration
GO:0001833 IEA inner cell mass cell proliferation
GO:0005515 IPI protein binding
GO:0005635 IEA nuclear envelope
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005813 IEA centrosome
GO:0005815 IEA microtubule organizing center
GO:0005829 TAS cytosol
GO:0005871 IEA kinesin complex
GO:0005874 IEA microtubule
GO:0005875 IEA microtubule associated complex
GO:0006508 IEA proteolysis
GO:0007059 IMP chromosome segregation
GO:0007100 IEA mitotic centrosome separation
GO:0008017 IEA microtubule binding
GO:0008090 IEA retrograde axon cargo transport
GO:0010975 IEA regulation of neuron projection development
GO:0016477 IEA cell migration
GO:0021799 IEA cerebral cortex radially oriented cell migration
GO:0021955 IEA central nervous system neuron axonogenesis
GO:0030424 IEA axon
GO:0031175 IEA neuron projection development
GO:0031252 IEA cell leading edge
GO:0032403 IEA protein complex binding
GO:0032864 IEA activation of Cdc42 GTPase activity
GO:0043014 IEA alpha-tubulin binding
GO:0043203 IEA axon hillock
GO:0044297 IEA cell body
GO:0045773 IEA positive regulation of axon extension
GO:0047496 IEA vesicle transport along microtubule
GO:0048487 IEA beta-tubulin binding
GO:0048680 IEA positive regulation of axon regeneration
GO:0051081 IEA nuclear envelope disassembly
GO:0051642 IEA centrosome localization
GO:0060052 IEA neurofilament cytoskeleton organization
GO:0060053 IEA neurofilament cytoskeleton
GO:0070012 IEA oligopeptidase activity
GO:1990138 IEA neuron projection extension

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018880 Ndel1-001 protein_coding Mus_musculus 0 2745
ENSMUST00000108672 Ndel1-002 protein_coding Mus_musculus 0 1435
ENSMUST00000101017 Ndel1-003 protein_coding Mus_musculus 0 1312
ENSMUST00000144300 Ndel1-005 processed_transcript Mus_musculus 0 1016
ENSMUST00000127469 Ndel1-006 processed_transcript Mus_musculus 0 798
ENSMUST00000143899 Ndel1-004 processed_transcript Mus_musculus 0 697

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