C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 1, catalytic subunit, gamma isozyme
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335007 PPP1CC-001 ENSG00000186298 9606 - 12:110719680-110742898 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335007
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335007 21.267±0.00 7.699±0.00 2.492±0.00 7.812±0.95 20.333±10.99 16.378±2.84 11.028±2.59 4.436±0.29 10.253±8.49 6.852±0.00 8.182±3.39 28.091±8.79 17.759±4.34 29.330±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0001 VISTA 12:110628804-111231731

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IEA kinetochore
GO:0004721 TAS phosphoprotein phosphatase activity
GO:0004722 IMP protein serine/threonine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0005977 IEA glycogen metabolic process
GO:0006470 ISS protein dephosphorylation
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0016787 IEA hydrolase activity
GO:0016791 ISS phosphatase activity
GO:0019433 TAS triglyceride catabolic process
GO:0019901 IPI protein kinase binding
GO:0030512 TAS negative regulation of transforming growth factor beta receptor signaling pathway
GO:0032922 ISS circadian regulation of gene expression
GO:0042752 IMP regulation of circadian rhythm
GO:0043153 ISS entrainment of circadian clock by photoperiod
GO:0043234 IMP protein complex
GO:0044281 TAS small molecule metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0047485 IPI protein N-terminus binding
GO:0051301 IEA cell division
GO:0070688 IDA MLL5-L complex
GO:0072357 IDA PTW/PP1 phosphatase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102528 Ppp1cc-001 protein_coding Mus_musculus 0 2211
ENSMUST00000086294 Ppp1cc-002 protein_coding Mus_musculus 0 1371
ENSMUST00000118909 AC164158.1-001 processed_pseudogene Mus_musculus 0 1363
ENSMUST00000122076 Gm14122-001 processed_pseudogene Mus_musculus 0 1203
ENSMUST00000132555 Ppp1cc-005 retained_intron Mus_musculus 0 1123
ENSMUST00000128309 Ppp1cc-009 retained_intron Mus_musculus 0 1123
ENSMUST00000118774 Gm5754-001 processed_pseudogene Mus_musculus 0 976
ENSMUST00000121207 Gm11848-001 processed_pseudogene Mus_musculus 0 898
ENSMUST00000134719 Ppp1cc-008 processed_transcript Mus_musculus 0 689
ENSDART00000092906 ppp1cab-001 protein_coding Danio_rerio 0 638
ENSMUST00000142562 Ppp1cc-007 retained_intron Mus_musculus 0 394
ENSMUST00000151184 Ppp1cc-006 processed_transcript Mus_musculus 0 346

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