C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIC3 acetylcholine receptor chaperone
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335425 RIC3-001 ENSG00000166405 9606 - 11:8106093-8169043 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverOvaryTestisENST00000335425
Transcript ID Brain Breast Heart Kidney Liver Ovary Testis
ENST00000335425 1.618±0.00 0.437±0.00 0.516±0.00 0.218±0.00 0.040±0.00 0.504±0.47 1.030±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0001 VISTA 11:7589795-8192277
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_00046S CIL_00046S_0001 CGP 11:7970251-8106112
CIL_0009BB CIL_0009BB_0001 VISTA 11:7996158-8596683
CIL_0007IX CIL_0007IX_0002 CGP 11:8019244-8169055
CIL_00043B CIL_00043B_0001 CGP 11:8106093-8268716

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IEA Golgi apparatus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147580 Ric3-005 nonsense_mediated_decay Mus_musculus 0 553
ENSMUST00000120876 Ric3-002 protein_coding Mus_musculus 0 553
ENSMUST00000055993 Ric3-001 protein_coding Mus_musculus 0 553
ENSMUST00000033341 Tub-001 protein_coding Mus_musculus 0 224

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