C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 1, 155kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000335508 SF3B1-001 ENSG00000115524 9606 - 2:197389784-197435091 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000335508
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000335508 19.263±0.00 22.567±0.00 2.805±0.00 12.777±6.99 8.815±3.98 20.877±0.64 10.521±8.04 4.470±2.11 13.910±11.93 7.136±0.00 3.534±1.61 24.520±8.65 16.282±3.38 26.929±5.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00042O CIL_00042O_0002 CGP 2:196967017-197435091
CIL_0007X7 CIL_0007X7_0001 VISTA 2:196975905-197591368
CIL_00042R CIL_00042R_0002 CGP 2:197389784-197475308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 NAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003682 IEA chromatin binding
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 NAS spliceosomal complex
GO:0005689 IDA U12-type spliceosomal complex
GO:0008380 TAS RNA splicing
GO:0009952 IEA anterior/posterior pattern specification
GO:0010467 TAS gene expression
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027127 Sf3b1-001 protein_coding Mus_musculus 0 6360
ENSDART00000078568 sf3b1-001 protein_coding Danio_rerio 0 2350
ENSMUST00000187500 Sf3b1-003 retained_intron Mus_musculus 0 1559
ENSMUST00000190175 Sf3b1-004 retained_intron Mus_musculus 0 1404
ENSMUST00000191303 Sf3b1-002 nonsense_mediated_decay Mus_musculus 0 710
ENSMUST00000189051 Sf3b1-007 processed_transcript Mus_musculus 0 671
ENSMUST00000188859 Sf3b1-006 retained_intron Mus_musculus 0 433
ENSMUST00000185429 Sf3b1-005 retained_intron Mus_musculus 0 351
ENSMUST00000188419 Sf3b1-008 retained_intron Mus_musculus 0 337

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