C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: src kinase associated phosphoprotein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336915 SKAP1-001 ENSG00000141293 9606 - 17:48133440-48430190 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLungOvaryPlacentaTestisENST00000336915
Transcript ID Adipose Adrenal Brain Breast Heart Lung Ovary Placenta Testis
ENST00000336915 0.167±0.00 4.301±0.00 0.056±0.00 1.021±0.00 0.045±0.00 2.585±2.00 1.633±0.97 0.612±0.31 8.980±2.48

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005070 IC SH3/SH2 adaptor activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0009967 IC positive regulation of signal transduction
GO:0017124 TAS SH3 domain binding
GO:0019901 IPI protein kinase binding
GO:0019903 IPI protein phosphatase binding
GO:0032403 IEA protein complex binding
GO:0042169 IDA SH2 domain binding
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050852 IMP T cell receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103154 Skap1-001 protein_coding Mus_musculus 0 1109
ENSMUST00000071510 Skap1-009 protein_coding Mus_musculus 0 859
ENSMUST00000100521 Skap1-008 protein_coding Mus_musculus 0 859
ENSMUST00000123814 Skap1-006 retained_intron Mus_musculus 0 372
ENSMUST00000136836 Skap1-007 retained_intron Mus_musculus 0 372

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