C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337227 RBBP9-001 ENSG00000089050 9606 - 20:18486540-18497243 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337227
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337227 2.472±0.00 4.032±0.00 0.457±0.00 2.923±0.00 2.178±0.91 0.997±0.08 0.876±0.57 4.515±1.09 1.539±0.42 1.766±0.20 0.086±0.00 1.869±0.42 1.934±0.31 2.204±1.68

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MV CIL_0002MV_0001 CGP 20:18467127-18497243
CIL_0002MU CIL_0002MU_0001 CGP 20:18486540-18561415

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0008152 IEA metabolic process
GO:0016787 IEA hydrolase activity
GO:0042127 IEA regulation of cell proliferation
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028915 Rbbp9-001 protein_coding Mus_musculus 0 791
ENSMUST00000140340 Rbbp9-002 processed_transcript Mus_musculus 0 385
ENSMUST00000133285 Prim1-002 retained_intron Mus_musculus 0.00007 55

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