C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 paralog C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000337432 RAD51C-001 ENSG00000108384 9606 + 17:58692573-58735611 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000337432
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000337432 0.903±0.08 0.667±0.00 0.324±0.00 0.859±0.00 0.734±0.00 0.280±0.00 0.471±0.00 0.387±0.00 0.887±0.00 0.772±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000566 CIL_000566_0002 CGP 17:58692573-58985176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000400 IDA four-way junction DNA binding
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003677 IEA:TAS DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006259 IEA DNA metabolic process
GO:0006281 IDA DNA repair
GO:0006310 IDA DNA recombination
GO:0007062 ISS sister chromatid cohesion
GO:0007066 IEA female meiosis sister chromatid cohesion
GO:0007131 IEA reciprocal meiotic recombination
GO:0007141 IEA male meiosis I
GO:0007283 IEA spermatogenesis
GO:0007596 TAS blood coagulation
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008821 IMP crossover junction endodeoxyribonuclease activity
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 IDA Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0033065 IDA Rad51C-XRCC3 complex
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048476 IDA Holliday junction resolvase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000067692 Rad51c-002 protein_coding Mus_musculus 0 1271
ENSMUST00000153073 Rad51c-004 nonsense_mediated_decay Mus_musculus 0 1149
ENSMUST00000007790 Rad51c-001 protein_coding Mus_musculus 0 1127
ENSMUST00000129400 Rad51c-003 nonsense_mediated_decay Mus_musculus 0 575
ENSMUST00000030474 Nsun4-002 nonsense_mediated_decay Mus_musculus 0.0002 53

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