C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDK5 regulatory subunit associated protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338399 CDK5RAP3-001 ENSG00000108465 9606 + 17:47971041-47981741 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000338399
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000338399 14.734±0.00 8.440±0.00 10.438±6.71 10.443±7.75 8.353±0.00 6.959±0.00 18.015±0.00 21.099±0.00 7.262±4.22 25.702±16.71 18.249±3.10 27.671±10.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331
CIL_0004MZ CIL_0004MZ_0002 CGP 17:47951967-47981774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000079 ISS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0007420 NAS brain development
GO:0016020 IDA membrane
GO:0019901 NAS protein kinase binding
GO:0045664 NAS regulation of neuron differentiation
GO:0071569 IDA protein ufmylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103152 Cdk5rap3-001 protein_coding Mus_musculus 0 1755
ENSMUST00000134732 Cdk5rap3-010 nonsense_mediated_decay Mus_musculus 0 1301
ENSMUST00000127048 Cdk5rap3-002 protein_coding Mus_musculus 0 784
ENSMUST00000156315 Cdk5rap3-005 protein_coding Mus_musculus 0 669
ENSMUST00000144731 Cdk5rap3-003 protein_coding Mus_musculus 0 604
ENSMUST00000147573 Cdk5rap3-011 nonsense_mediated_decay Mus_musculus 0 571
ENSMUST00000153305 Cdk5rap3-007 nonsense_mediated_decay Mus_musculus 0 451
ENSMUST00000149033 Cdk5rap3-008 retained_intron Mus_musculus 0 440
ENSMUST00000130767 Cdk5rap3-006 retained_intron Mus_musculus 0 422
ENSMUST00000130774 Cdk5rap3-004 protein_coding Mus_musculus 3e-25 121

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