C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paralemmin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338448 PALM-001 ENSG00000099864 9606 + 19:709101-748330 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338448
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338448 39.665±0.00 24.781±0.00 1.356±0.00 13.103±6.39 33.813±32.84 17.995±16.78 1.281±0.70 11.831±0.00 2.139±0.00 9.004±7.98 0.426±0.00 39.453±41.17 30.132±11.82 11.724±5.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0001F5 CIL_0001F5_0001 CGP 19:685546-748330
CIL_00008D CIL_00008D_0001 CGP 19:709093-764319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 IDA plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006928 TAS cellular component movement
GO:0007010 IEA cytoskeleton organization
GO:0007194 IDA negative regulation of adenylate cyclase activity
GO:0008104 IEA protein localization
GO:0008360 IEA regulation of cell shape
GO:0016020 IEA membrane
GO:0016023 TAS cytoplasmic membrane-bounded vesicle
GO:0016323 IEA basolateral plasma membrane
GO:0016327 IEA apicolateral plasma membrane
GO:0030175 IEA filopodium
GO:0030424 IEA axon
GO:0030818 IEA negative regulation of cAMP biosynthetic process
GO:0031527 IDA filopodium membrane
GO:0031750 IEA D3 dopamine receptor binding
GO:0032590 IEA dendrite membrane
GO:0032591 IEA dendritic spine membrane
GO:0044309 IEA neuron spine
GO:0051491 IDA positive regulation of filopodium assembly
GO:0060074 IEA synapse maturation
GO:0060160 IDA negative regulation of dopamine receptor signaling pathway
GO:0060999 IEA positive regulation of dendritic spine development
GO:0071257 IEA cellular response to electrical stimulus
GO:0072661 IEA protein targeting to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046945 Palm-201 protein_coding Mus_musculus 0 917

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