C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H6 family homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339992 HMX2-001 ENSG00000188816 9606 + 10:123148122-123150672 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderColonKidneyLungTestisENST00000339992
Transcript ID Bladder Colon Kidney Lung Testis
ENST00000339992 0.088±0.00 0.085±0.00 2.400±0.00 0.017±0.00 0.074±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DB CIL_0008DB_0001 VISTA 10:122767938-123370218
CIL_0009A3 CIL_0009A3_0001 VISTA 10:122792297-123393555
CIL_0007QE CIL_0007QE_0001 VISTA 10:122843411-123445122
CIL_00099C CIL_00099C_0001 VISTA 10:123048803-123649878
CIL_0007LX CIL_0007LX_0001 UCNEbase 10:123069326-123458100
CIL_0008SI CIL_0008SI_0001 VISTA 10:123129471-123730559
CIL_00011S CIL_00011S_0001 CGP 10:123135962-123150672
CIL_00011T CIL_00011T_0001 CGP 10:123148122-123170467

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0008284 IEA positive regulation of cell proliferation
GO:0030154 IEA cell differentiation
GO:0042472 IEA inner ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0048026 IEA positive regulation of mRNA splicing, via spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000051997 Hmx2-001 protein_coding Mus_musculus 0 1406
ENSMUST00000183219 Hmx2-002 protein_coding Mus_musculus 0 1171
ENSMUST00000087674 Hmx1-001 protein_coding Mus_musculus 0 237

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