C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vaccinia related kinase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340157 VRK2-001 ENSG00000028116 9606 + 2:58046691-58159871 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000340157
Transcript ID Adipose Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000340157 2.917±0.00 3.562±0.00 2.028±0.00 3.403±2.42 2.508±0.00 2.809±0.00 1.861±0.00 7.673±0.00 2.246±0.06 4.781±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BO CIL_0008BO_0001 VISTA 2:57445240-58046040
CIL_0007ZI CIL_0007ZI_0001 VISTA 2:57618972-58220354
CIL_0007LM CIL_0007LM_0001 UCNEbase 2:57740887-60568309
CIL_0007WS CIL_0007WS_0001 VISTA 2:57829929-58432668

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004672 IEA protein kinase activity
GO:0004674 IDA protein serine/threonine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005789 IDA endoplasmic reticulum membrane
GO:0006468 TAS:IEA protein phosphorylation
GO:0016021 IEA integral component of membrane
GO:0016032 IEA viral process
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0031966 IDA mitochondrial membrane
GO:0034599 IMP cellular response to oxidative stress
GO:0043408 IMP regulation of MAPK cascade
GO:0046777 IDA protein autophosphorylation
GO:2000659 IMP regulation of interleukin-1-mediated signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078362 Vrk2-201 protein_coding Mus_musculus 0 1081
ENSMUST00000109504 Vrk2-001 protein_coding Mus_musculus 0 1079
ENSMUST00000133487 Vrk2-006 processed_transcript Mus_musculus 3e-40 171
ENSMUST00000124294 Vrk2-003 retained_intron Mus_musculus 6e-28 130

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