C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lipoic acid synthetase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340169 LIAS-008 ENSG00000121897 9606 + 4:39459000-39477584 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340169
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340169 0.713±0.00 0.807±0.00 1.488±0.00 2.104±0.00 1.486±0.00 1.660±0.00 1.045±0.00 0.447±0.00 2.177±0.00 1.810±0.00 1.268±1.00 6.653±3.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002TV CIL_0002TV_0002 CGP 4:39454124-39477653
CIL_000278 CIL_000278_0002 CGP 4:39459000-39528311

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005739 ISS mitochondrion
GO:0006954 ISS inflammatory response
GO:0006979 ISS response to oxidative stress
GO:0009107 ISS:IEA lipoate biosynthetic process
GO:0009249 IEA protein lipoylation
GO:0016992 ISS:IEA lipoate synthase activity
GO:0032496 ISS response to lipopolysaccharide
GO:0046872 IEA metal ion binding
GO:0051536 IEA iron-sulfur cluster binding
GO:0051539 IEA 4 iron, 4 sulfur cluster binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031101 Lias-001 protein_coding Mus_musculus 0 1038
ENSMUST00000126036 Lias-004 retained_intron Mus_musculus 0 470
ENSMUST00000139847 Lias-002 retained_intron Mus_musculus 0 422
ENSMUST00000122026 Lias-003 protein_coding Mus_musculus 1e-18 99

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