C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: von Willebrand factor C domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340652 VWC2-001 ENSG00000188730 9606 + 7:49773661-49921950 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340652
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340652 0.021±0.00 0.112±0.00 0.005±0.00 1.048±0.26 0.020±0.02 0.024±0.01 1.965±0.00 0.039±0.00 0.007±0.01 0.063±0.02 0.033±0.00 0.515±0.42 0.011±0.01 0.087±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000S3 CIL_0000S3_0001 CGP 7:48171458-49921950
CIL_0006LI CIL_0006LI_0001 CGP 7:49773661-50121329

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005604 IEA basement membrane
GO:0005614 IEA interstitial matrix
GO:0005615 ISS extracellular space
GO:0010811 IEA positive regulation of cell-substrate adhesion
GO:0030054 IEA cell junction
GO:0030514 ISS negative regulation of BMP signaling pathway
GO:0031012 IEA extracellular matrix
GO:0032281 IEA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0045666 ISS positive regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109681 Vwc2-001 protein_coding Mus_musculus 0 1681
ENSMUST00000129670 Vwc2-002 nonsense_mediated_decay Mus_musculus 0 1548
ENSMUST00000056344 Vwc2-201 protein_coding Mus_musculus 0 1491
ENSMUST00000154155 Vwc2-003 processed_transcript Mus_musculus 4.00001e-41 176
ENSMUST00000162182 Vwc2l-004 protein_coding Mus_musculus 0.00000000001 79
ENSMUST00000053922 Vwc2l-001 protein_coding Mus_musculus 0.00000000001 79
ENSMUST00000105140 AW011738-201 protein_coding Mus_musculus 0.0002 55

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