C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341372 TPM3-005 ENSG00000143549 9606 - 1:154156366-154183181 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungOvaryPlacentaTestisENST00000341372
Transcript ID Kidney Liver Lung Ovary Placenta Testis
ENST00000341372 20.964±16.33 18.377±0.00 25.213±13.09 23.044±15.88 50.186±4.84 14.333±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000062193 Tpm3-201 protein_coding Mus_musculus 0 1018
ENSMUST00000029549 Tpm3-003 protein_coding Mus_musculus 0 1018
ENSMUST00000119570 Tpm3-001 protein_coding Mus_musculus 0 1018
ENSMUST00000072359 Tpm3-rs7-201 protein_coding Mus_musculus 0 1018
ENSMUST00000119158 Tpm3-005 protein_coding Mus_musculus 0 555
ENSMUST00000118566 Tpm3-004 protein_coding Mus_musculus 0 555
ENSMUST00000121503 Tpm3-002 protein_coding Mus_musculus 0 555
ENSMUST00000133281 Tpm3-010 retained_intron Mus_musculus 0 418
ENSMUST00000133361 Tpm3-013 retained_intron Mus_musculus 0 412
ENSMUST00000149432 Tpm3-007 protein_coding Mus_musculus 0 372
ENSMUST00000131354 Tpm3-006 retained_intron Mus_musculus 0 372
ENSMUST00000147430 Tpm3-011 retained_intron Mus_musculus 0 372
ENSMUST00000151798 Tpm3-012 retained_intron Mus_musculus 0 287
ENSMUST00000149734 Tpm3-014 retained_intron Mus_musculus 0 279
ENSMUST00000149115 Tpm3-009 retained_intron Mus_musculus 0 217
ENSMUST00000143281 Tpm3-015 retained_intron Mus_musculus 0 211
ENSMUST00000127955 Tpm3-008 protein_coding Mus_musculus 2e-27 128

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