C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: delta/notch-like EGF repeat containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341772 DNER-001 ENSG00000187957 9606 - 2:229357629-229714558 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000341772
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000341772 0.197±0.00 0.004±0.00 0.623±0.00 39.084±24.55 0.222±0.00 2.214±2.14 0.334±0.28 14.375±0.00 0.072±0.03 1.106±0.89 0.348±0.00 0.168±0.00 0.557±0.04 0.391±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AT CIL_0004AT_0002 CGP 2:228850526-229714558
CIL_00087W CIL_00087W_0001 VISTA 2:229259676-229860905
CIL_00076T CIL_00076T_0001 CGP 2:229357629-229923239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 NAS neuron migration
GO:0004888 TAS transmembrane signaling receptor activity
GO:0005112 IEA Notch binding
GO:0005509 NAS:IEA calcium ion binding
GO:0005515 IPI:IEA protein binding
GO:0005769 IDA early endosome
GO:0005886 IDA plasma membrane
GO:0006897 NAS endocytosis
GO:0007219 TAS Notch signaling pathway
GO:0007220 IEA Notch receptor processing
GO:0007416 NAS synapse assembly
GO:0007417 IEP central nervous system development
GO:0010001 IEA glial cell differentiation
GO:0016021 IEA integral component of membrane
GO:0030276 TAS clathrin binding
GO:0030425 IDA dendrite
GO:0043025 IEA neuronal cell body
GO:0048741 IEA skeletal muscle fiber development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000049126 Dner-001 protein_coding Mus_musculus 0 3186
ENSMUST00000191306 Dner-002 retained_intron Mus_musculus 0 1077
ENSMUST00000185606 Dner-003 protein_coding Mus_musculus 0 651
ENSMUST00000191546 Dner-004 protein_coding Mus_musculus 0 536

Loading