C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane and tetratricopeptide repeat containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342624 TMTC4-001 ENSG00000125247 9606 - 13:100603934-100674795 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000342624
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000342624 1.472±0.00 1.790±0.00 0.949±0.00 0.344±0.06 0.900±0.00 3.727±0.00 1.124±0.00 0.691±0.05 3.176±2.20 1.569±1.40 3.372±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NV CIL_0005NV_0001 CGP 13:100530164-100675093
CIL_0000WK CIL_0000WK_0001 CGP 13:100603927-101416492

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000126867 Tmtc4-005 protein_coding Mus_musculus 0 2859
ENSMUST00000037726 Tmtc4-001 protein_coding Mus_musculus 0 2859
ENSMUST00000148661 Tmtc4-004 protein_coding Mus_musculus 0 2854
ENSMUST00000135917 Tmtc4-002 retained_intron Mus_musculus 0 2052
ENSMUST00000143189 Tmtc4-003 nonsense_mediated_decay Mus_musculus 0 1254
ENSMUST00000126494 Tmtc4-007 processed_transcript Mus_musculus 0 1072
ENSMUST00000128969 Tmtc4-006 nonsense_mediated_decay Mus_musculus 0 403
ENSMUST00000125900 Tmtc4-008 retained_intron Mus_musculus 0 309
ENSDART00000078681 tmtc4-201 protein_coding Danio_rerio 5.60519e-45 187
ENSDART00000127214 tmtc4-001 protein_coding Danio_rerio 5.60519e-45 187

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