C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proline/arginine-rich end leucine-rich repeat protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343110 PRELP-001 ENSG00000188783 9606 + 1:203475828-203491352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343110
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343110 66.321±0.00 15.674±0.00 2.156±0.00 3.722±2.84 18.369±14.53 60.969±58.98 9.412±8.38 4.189±3.56 5.408±0.95 33.745±29.66 12.651±10.26 30.938±31.67 8.360±4.40 21.650±19.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0005201 IEA extracellular matrix structural constituent
GO:0005515 IEA protein binding
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005796 TAS Golgi lumen
GO:0005975 TAS carbohydrate metabolic process
GO:0007569 IEA cell aging
GO:0008201 IEA heparin binding
GO:0018146 TAS keratan sulfate biosynthetic process
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0031012 IDA extracellular matrix
GO:0031982 IDA vesicle
GO:0042339 TAS keratan sulfate metabolic process
GO:0042340 TAS keratan sulfate catabolic process
GO:0043202 TAS lysosomal lumen
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000048432 Prelp-001 protein_coding Mus_musculus 0 1428
ENSMUST00000127583 Prelp-002 processed_transcript Mus_musculus 0 802

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