C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ly1 antibody reactive
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343470 LYAR-001 ENSG00000145220 9606 - 4:4267701-4290169 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343470
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343470 7.067±0.00 9.894±0.00 1.534±0.76 4.508±0.00 5.553±4.46 2.778±2.37 3.810±0.00 2.100±1.42 2.493±2.25 8.138±0.00 7.914±4.71 4.711±2.50 56.108±18.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ZA CIL_0008ZA_0001 VISTA 4:4157066-4757929
CIL_00096M CIL_00096M_0001 VISTA 4:4215001-4816750
CIL_0008QQ CIL_0008QQ_0001 VISTA 4:4221140-4822323
CIL_000707 CIL_000707_0002 CGP 4:4235542-4290169
CIL_0003E6 CIL_0003E6_0002 CGP 4:4267701-4321786

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114106 Lyar-003 protein_coding Mus_musculus 0 580
ENSMUST00000087514 Lyar-001 protein_coding Mus_musculus 0 580
ENSMUST00000132190 Lyar-002 protein_coding Mus_musculus 0 475
ENSMUST00000130721 Lyar-005 protein_coding Mus_musculus 0 475
ENSMUST00000155300 Lyar-008 protein_coding Mus_musculus 0 442
ENSMUST00000123207 Lyar-004 protein_coding Mus_musculus 0 370
ENSMUST00000131492 Lyar-009 retained_intron Mus_musculus 0 300
ENSMUST00000152066 Lyar-006 protein_coding Mus_musculus 0 217
ENSMUST00000146401 Lyar-007 nonsense_mediated_decay Mus_musculus 0 193
ENSMUST00000154975 Lyar-010 nonsense_mediated_decay Mus_musculus 0 193

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