C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tripartite motif containing 24
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343526 TRIM24-001 ENSG00000122779 9606 + 7:138460334-138589993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLiverLungOvaryPlacentaTestisENST00000343526
Transcript ID Adipose Brain Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000343526 0.850±0.00 0.430±0.00 0.317±0.00 0.437±0.20 0.335±0.10 0.571±0.01 0.184±0.00 2.307±0.93 0.357±0.09 0.975±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002Q4 CIL_0002Q4_0001 CGP 7:138002324-138589993
CIL_0002Q3 CIL_0002Q3_0001 CGP 7:138460334-138701352

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002039 IPI p53 binding
GO:0003682 IDA chromatin binding
GO:0003713 IDA transcription coactivator activity
GO:0004672 IEA protein kinase activity
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005102 TAS receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0005726 IEA perichromatin fibrils
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006468 IEA protein phosphorylation
GO:0008270 IDA:IEA zinc ion binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0010628 IEA positive regulation of gene expression
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0016922 IEA ligand-dependent nuclear receptor binding
GO:0030163 IMP protein catabolic process
GO:0031647 IMP regulation of protein stability
GO:0034056 IDA estrogen response element binding
GO:0042981 IMP regulation of apoptotic process
GO:0043434 IEA response to peptide hormone
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046777 IEA protein autophosphorylation
GO:0055074 IEA calcium ion homeostasis
GO:0070562 IEA regulation of vitamin D receptor signaling pathway
GO:0070577 IDA lysine-acetylated histone binding
GO:0071391 IDA cellular response to estrogen stimulus
GO:1901796 IEA regulation of signal transduction by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000031859 Trim24-001 protein_coding Mus_musculus 0 4008
ENSMUST00000120238 Trim24-003 protein_coding Mus_musculus 0 3570
ENSMUST00000120428 Trim24-002 protein_coding Mus_musculus 0 1964
ENSMUST00000149828 Trim24-006 retained_intron Mus_musculus 0 1439
ENSMUST00000149561 Trim24-004 processed_transcript Mus_musculus 0 994
ENSMUST00000153004 Trim24-005 retained_intron Mus_musculus 0 608
ENSMUST00000135387 Trim24-008 retained_intron Mus_musculus 0 497
ENSMUST00000123007 Trim24-007 retained_intron Mus_musculus 0 366

Loading