C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi-associated, gamma adaptin ear containing, ARF binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343632 GGA1-001 ENSG00000100083 9606 + 22:37608475-37633564 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLungMuscleOvaryPlacentaTestisENST00000343632
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000343632 1.861±0.00 3.665±0.00 4.964±0.00 3.294±0.00 3.470±0.00 7.109±0.00 2.036±1.41 6.161±0.00 11.525±5.91 2.366±0.36 34.806±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040E CIL_00040E_0001 CGP 22:37570246-37633564
CIL_00040D CIL_00040D_0001 CGP 22:37608475-37666932

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005768 IEA endosome
GO:0005794 TAS Golgi apparatus
GO:0006886 IEA:TAS intracellular protein transport
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030131 IEA clathrin adaptor complex
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0045732 IEA positive regulation of protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041587 Gga1-201 protein_coding Mus_musculus 0 2425
ENSMUST00000128437 Gga3-006 processed_transcript Mus_musculus 6e-30 137
ENSMUST00000106508 Gga3-002 protein_coding Mus_musculus 6e-30 137
ENSMUST00000019135 Gga3-001 protein_coding Mus_musculus 6e-30 137
ENSMUST00000123485 Gga3-010 processed_transcript Mus_musculus 3e-22 111
ENSMUST00000156173 Gga3-003 nonsense_mediated_decay Mus_musculus 3e-17 95
ENSMUST00000154832 Gga3-011 processed_transcript Mus_musculus 0.0000000006 71

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