C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: recombination signal binding protein for immunoglobulin kappa J region-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343694 RBPJL-002 ENSG00000124232 9606 + 20:45306851-45317822 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003V4 CIL_0003V4_0001 CGP 20:45252239-45308529
CIL_0003L4 CIL_0003L4_0001 CGP 20:45293445-45317824
CIL_0003L5 CIL_0003L5_0001 CGP 20:45306851-45348424

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000982 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 TAS:IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000017151 Rbpjl-001 protein_coding Mus_musculus 0 1681
ENSMUST00000137427 Rbpjl-002 retained_intron Mus_musculus 0 1048
ENSMUST00000109356 Rbpjl-003 processed_transcript Mus_musculus 0 479

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