C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IX, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343916 COL9A3-001 ENSG00000092758 9606 + 20:62817062-62841159 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLungOvaryPlacentaENST00000343916
Transcript ID Adrenal Brain Colon Lung Ovary Placenta
ENST00000343916 1.357±0.00 11.111±0.00 2.780±0.00 1.313±0.00 8.472±0.00 3.763±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001O6 CIL_0001O6_0001 CGP 20:62804835-62841159
CIL_0001O1 CIL_0001O1_0001 CGP 20:62816244-62861763

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005594 IDA collagen type IX trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 IC extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000103059 Col9a3-201 protein_coding Mus_musculus 0 1923
ENSMUST00000132527 Col9a3-001 protein_coding Mus_musculus 0 1923
ENSMUST00000129090 Col9a3-002 retained_intron Mus_musculus 0 972

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