C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sialic acid binding Ig-like lectin 1, sialoadhesin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344754 SIGLEC1-001 ENSG00000088827 9606 - 20:3686970-3707128 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344754
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344754 0.994±0.00 2.407±0.00 0.128±0.00 0.182±0.00 1.726±0.00 0.172±0.00 1.170±0.88 0.413±0.17 1.066±0.60 1.675±0.75 1.016±0.00 0.644±0.45 7.596±0.29 0.616±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003D8 CIL_0003D8_0001 CGP 20:3667965-3707128
CIL_0004Q3 CIL_0004Q3_0001 CGP 20:3686970-3753111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0005886 IEA plasma membrane
GO:0006897 IEA endocytosis
GO:0006954 NAS inflammatory response
GO:0007160 NAS cell-matrix adhesion
GO:0016021 NAS integral component of membrane
GO:0016337 NAS single organismal cell-cell adhesion
GO:0030246 NAS carbohydrate binding
GO:0070234 IEA positive regulation of T cell apoptotic process
GO:2001238 IEA positive regulation of extrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028794 Siglec1-001 protein_coding Mus_musculus 0 3155
ENSMUST00000110227 Siglec1-002 protein_coding Mus_musculus 0 2894

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