C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tropomyosin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000344824 TPM4-001 ENSG00000167460 9606 + 19:16067507-16101790 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverOvaryENST00000344824
Transcript ID Bladder Breast Colon Kidney Liver Ovary
ENST00000344824 7.098±0.00 19.451±0.00 7.483±0.00 2.795±0.00 52.252±0.00 42.362±9.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IM CIL_0000IM_0001 CGP 19:16067021-16134234

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001649 IDA osteoblast differentiation
GO:0001725 IDA stress fiber
GO:0002102 IEA podosome
GO:0003779 IEA actin binding
GO:0005509 NAS calcium ion binding
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0005856 TAS cytoskeleton
GO:0005862 TAS muscle thin filament tropomyosin
GO:0005925 IDA focal adhesion
GO:0006928 TAS cellular component movement
GO:0006936 TAS muscle contraction
GO:0008307 TAS structural constituent of muscle
GO:0016020 IDA membrane
GO:0030049 TAS muscle filament sliding
GO:0030863 IEA cortical cytoskeleton
GO:0031941 IEA filamentous actin
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003575 Tpm4-001 protein_coding Mus_musculus 0 944
ENSMUST00000107913 Tpm2-201 protein_coding Mus_musculus 0 662
ENSDART00000009054 tpm4a-201 protein_coding Danio_rerio 0 606
ENSDART00000036075 tpm4a-202 protein_coding Danio_rerio 0 604
ENSMUST00000107914 Tpm2-001 protein_coding Mus_musculus 0 601
ENSDART00000098875 tpm2-001 protein_coding Danio_rerio 0 575
ENSMUST00000030184 Tpm2-002 protein_coding Mus_musculus 0 568
ENSMUST00000150262 Tpm2-003 processed_transcript Mus_musculus 0 540
ENSDART00000140580 tpm2-003 protein_coding Danio_rerio 0 499
ENSDART00000123125 tpm4a-203 protein_coding Danio_rerio 0 416
ENSDART00000142717 tpm4a-001 protein_coding Danio_rerio 0 416
ENSDART00000138978 tpm4a-002 protein_coding Danio_rerio 0 414
ENSMUST00000150592 Tpm2-004 protein_coding Mus_musculus 0 313

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